In discussions like this I find it helpful to bear this table in mind:
http://en.wikipedia.org/wiki/Population_of_the_countries_of_the_United_Kingdom#Rankings
i.e. in population terms, England's is more than 10x Scotland's. The whole of Scotland has a smaller population than England's South East, Greater London, North West, West Midlands OR East regions; and roughly the same population as England's South West OR Yorkshire and the Humber regions.
Now I understand it's a country in its own right ... but really, when you look at the political coverage and influence of Scotland versus, say, Yorkshire, Scotland seems to get represented more than fairly.
Nobody is suggesting that if Yorkshire and the Humber voted against leaving the EU, yet the UK as a whole voted for it, that we would not do it. So why should a Scottish vote count more than a Yorkshire vote on this issue?